List of Positions

List of Positions: Fields

Name

Type

Description

Required

Reference

str

Name of the reference sequence

yes

Position

int

Position in the reference sequence

yes

…

n/a

Additional field (ignored)

no

List of Positions file: Uses

List of Positions as input file

  • The mask command accepts a List of Positions file via --exclude-file.

List of Positions as output file

  • The listpos command outputs a List of Positions file for each table file.

Example List of Positions

List of Positions as a pretty table

Reference

Position

refA

11

refA

16

refA

20

refB

11

refB

46

refB

83

List of Positions as plain text

Reference,Position
refA,11
refA,16
refA,20
refB,11
refB,46
refB,83

This text can be copied into a new CSV file.