File Formats

• Data Formats
  • FASTA: Reference sequences
  • FASTQ: Sequencing Reads
  • SAM, BAM, and CRAM: Alignment Maps
  • Brickle: Compressed Python Objects
  • Connectivity Table (CT): RNA secondary structures
  • Dot-bracket (DB): RNA secondary structures
  • VARNA Color: Color codes for VARNA
  • Sample results: Export data from SEISMIC-RNA to SEISMIC-GRAPH
• List Formats
  • List of Positions
• Metadata Formats
  • Metadata for Samples
  • Metadata for References
  • Metadata for Regions
  • Metadata for Joined Clusters
• Report Formats
  • Align Report
  • Relate Report
  • Pool Report
  • Mask Report
  • Cluster Report
  • Join Report
  • Fold Report