Cluster Report

Cluster Report: Fields

Name	Data Type
Name of Sample	str
Name of Reference	str
Name of Region	str
Number of Unique Bit Vectors	int
Maximum Number of Clusters	int
Number of Independent EM Runs	int
Minimum EM Iterations per Cluster	int
Maximum EM Iterations per Cluster	int
Convergence Threshold for Log Likelihood	float
Iterations Until Convergence per Run	dict[int, list[int]]
Log Likelihood per Run	dict[int, list[float]]
Mean Log Likelihood per Order	dict[int, float]
Std. Dev. Log Likelihood per Order	dict[int, float]
Variation of Information per Order	dict[int, float]
Bayesian Information Criterion per Order	dict[int, float]
Optimal Number of Clusters	int
Number of Batches	int
MD5 Checksums of Batches	dict[str, list[str]]
Branches	list[str]
Time Began	str
Time Ended	str
Time Taken (minutes)	float
Version of SEISMIC-RNA	str

Cluster Report: Example

{
    "Name of Sample": "ldi",
    "Name of Reference": "sars2_1799",
    "Name of Region": "fse",
    "Number of Unique Bit Vectors": 104850,
    "Maximum Number of Clusters": 2,
    "Number of Independent EM Runs": 1,
    "Minimum EM Iterations per Cluster": 10,
    "Maximum EM Iterations per Cluster": 300,
    "Convergence Threshold for Log Likelihood": 0.01,
    "Iterations Until Convergence per Run": {
        "1": [
            2
        ],
        "2": [
            512
        ]
    },
    "Log Likelihood per Run": {
        "1": [
            -3078650.555
        ],
        "2": [
            -3073073.026
        ]
    },
    "Mean Log Likelihood per Order": {
        "1": -3078650.555,
        "2": -3073073.026
    },
    "Std. Dev. Log Likelihood per Order": {
        "1": 0.0,
        "2": 0.0
    },
    "Variation of Information per Order": {
        "1": 0.0,
        "2": 0.0
    },
    "Bayesian Information Criterion per Order": {
        "1": 6158468.699,
        "2": 6148481.23
    },
    "Optimal Number of Clusters": 2,
    "Number of Batches": 16,
    "MD5 Checksums of Batches": {
        "clust": [
            "6a88a23437d10cdb68e29beebf70abb8",
            "2468a801a2686bd198bd726cc90ff30f",
            "3efe0b5aea70954ff37ced0ce509fc40",
            "d4361a74f58bfcaab96d9448eb6d91dd",
            "b8aafa415ba94b6d8d34e3433316a2a3",
            "21b2f8c6cd976858476cc52297e276b3",
            "d120b2d3a8f67458bac23e68aad745ce",
            "4176c9379dfa59a73954469290c90740",
            "4be0122fc2d700f7d75f236cf11dcca3",
            "1323277603f89c04fcb665a34e2790b1",
            "4265f976d74f05d6a9bbacb4e4efe443",
            "c76bc505a886475d93743202a6d61461",
            "36af6fb7b3e8ab41ac569c5f6547b039",
            "778d808c7d34aa3abf0cfcad1c5eb8a6",
            "e007d6017dae45004c11906a6bc073da",
            "c2e57a06bcde2a3dd99f8ed9ce7c4947"
        ]
    },
    "Branches": [],
    "Time Began": "2023-12-18 at 17:52:50",
    "Time Ended": "2023-12-18 at 17:53:33",
    "Time Taken (minutes)": 0.7,
    "Version of SEISMIC-RNA": "0.10.0"
}