Data Formats

• FASTA: Reference sequences
  • FASTA file: Content format
  • FASTA file: Path format
  • FASTA file: Uses
• FASTQ: Sequencing Reads
  • FASTQ file: Content format
  • FASTQ file: Path format
  • FASTQ file: Uses
• SAM, BAM, and CRAM: Alignment Maps
  • XAM file: Content format
  • XAM file: Path format
  • XAM file: Uses
• Brickle: Compressed Python Objects
  • Brickle file: Content format
  • Brickle file: Path format
  • Brickle file: Uses
• Connectivity Table (CT): RNA secondary structures
  • CT file: Content format
  • CT file: Path format
  • CT file: Uses
• Dot-bracket (DB): RNA secondary structures
  • DB file: Content format
  • DB file: Path format
  • DB file: Uses
• VARNA Color: Color codes for VARNA
  • VARNA color file: Content format
  • VARNA color file: Path format
  • VARNA color file: Uses
• Sample results: Export data from SEISMIC-RNA to SEISMIC-GRAPH
  • Sample results: Content format
  • Sample results file: Path format
  • Sample results file: Uses