List of Positions
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List of Positions: Fields
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========= ==== ========================================================= ========
Name      Type Description                                               Required
========= ==== ========================================================= ========
Reference str  Name of the reference sequence                            yes
Position  int  Position in the reference sequence                        yes
...       n/a  Additional field (ignored)                                no
========= ==== ========================================================= ========

List of Positions file: Uses
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List of Positions as input file
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- The ``mask`` command accepts a List of Positions file via ``--exclude-file``.

List of Positions as output file
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- The ``listpos`` command outputs a List of Positions file for each table file.

Example List of Positions
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

List of Positions as a pretty table
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========= ========
Reference Position
========= ========
refA            11
refA            16
refA            20
refB            11
refB            46
refB            83
========= ========

List of Positions as plain text
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::

    Reference,Position
    refA,11
    refA,16
    refA,20
    refB,11
    refB,46
    refB,83

This text can be copied into a new CSV file.