seismicrna.core.tests package

Submodules

class seismicrna.core.tests.array_test.TestCalcInverse(methodName='runTest')

Bases: TestCase

test_calc_inverse(): Invert an array with a known inverse.

test_calc_inverse_fill_fwd(): Invert an array with a known inverse; fill forward.

test_calc_inverse_fill_fwd_max()

test_calc_inverse_fill_fwd_max_default()

test_calc_inverse_fill_rev(): Invert an array with a known inverse; fill reverse.

test_calc_inverse_fill_rev_max()

test_calc_inverse_fill_rev_max_default()

test_calc_inverse_max(): Invert an array with a known inverse.

test_empty()

test_empty_max()

test_is_inverse(): Verify every position in the inverse of a random array.

test_negative(): Negative values in the target are not permitted.

test_repeated(): Repeated values in the target are not permitted.

class seismicrna.core.tests.array_test.TestEnsureSameLength(methodName='runTest')

Bases: TestCase

test_diff_lengths(): Unequal lengths are not permitted.

test_other_dims(): Non-1D arrays are not valid.

test_same_length(): The length is returned when the arrays share the length.

class seismicrna.core.tests.array_test.TestFindDims(methodName='runTest')

Bases: TestCase

test_0d()

test_0d_1dim()

test_0d_none()

test_0d_nonzero()

test_0d_nonzero_extra()

test_1d()

test_1d_0dim_none()

test_1d_1d_crossed()

test_1d_1d_separate()

test_1d_1dim_none()

test_1d_2d_congruent()

test_1d_2d_crossed()

test_1d_2dim()

test_1d_2dim_none()

test_1d_nonzero()

test_2d()

test_2d_1dim_none()

test_2d_2d_congruent()

test_2d_2d_crossed()

test_2d_nonzero()

test_empty()

test_none_2d()

class seismicrna.core.tests.array_test.TestGetLength(methodName='runTest')

Bases: TestCase

test_1d(): A 1D array has a length.

test_other_dims(): Non-1D arrays are not valid.

class seismicrna.core.tests.array_test.TestIntersect1dUniqueSorted(methodName='runTest')

Bases: TestCase

test_both_empty()

test_random()

test_x_empty()

test_xy_1_element_diff()

test_xy_1_element_same()

test_xy_2_elements_diff()

test_xy_2_elements_part()

test_xy_2_elements_same()

test_xy_longer()

test_y_empty()

class seismicrna.core.tests.array_test.TestLocateElements(methodName='runTest')

Bases: TestCase

test_locate_0()

test_locate_1()

test_locate_2()

test_locate_invalid()

class seismicrna.core.tests.array_test.TestTriangular(methodName='runTest')

Bases: TestCase

test_whole_numbers()

class seismicrna.core.tests.header_test.TestClustHeader(methodName='runTest')

Bases: TestCase

test_clustered()

test_clusts()

test_index()

test_iter_clust_indexes()

test_ks_invalid()

test_ks_valid()

test_level_keys()

test_level_names()

test_levels()

test_modified_ks()

test_modified_none()

test_modified_rels()

test_names()

test_num_levels()

test_select_clust()

test_select_clusts()

test_select_extra()

test_select_invalid_clust()

test_select_invalid_k()

test_select_k()

test_select_k_clust_empty()

test_select_k_clust_exist()

test_select_ks()

test_select_ks_clusts_exist()

test_select_none()

test_signature()

class seismicrna.core.tests.header_test.TestConstants(methodName='runTest')

Bases: TestCase

test_average_prefix()

test_clust_name()

test_cluster_prefix()

test_k_name()

test_rel_name()

class seismicrna.core.tests.header_test.TestDeduplicateRels(methodName='runTest')

Bases: TestCase

test_duplicates()

test_empty()

test_no_duplicates()

class seismicrna.core.tests.header_test.TestEqualHeaders(methodName='runTest')

Bases: TestCase

test_clustheaders()

test_different_types()

test_relclustheaders()

test_relheaders()

class seismicrna.core.tests.header_test.TestFormatClustName(methodName='runTest')

Bases: TestCase

test_positive()

test_zero()

class seismicrna.core.tests.header_test.TestFormatClustNames(methodName='runTest')

Bases: TestCase

test_positive_invalid_dups()

test_positive_no_dups()

test_positive_valid_dups()

test_zero()

class seismicrna.core.tests.header_test.TestHeader(methodName='runTest')

Bases: TestCase

test_abstract()

class seismicrna.core.tests.header_test.TestListClusts(methodName='runTest')

Bases: TestCase

test_positive()

test_zero()

class seismicrna.core.tests.header_test.TestListKClusts(methodName='runTest')

Bases: TestCase

test_positive()

test_zero()

class seismicrna.core.tests.header_test.TestListKsClusts(methodName='runTest')

Bases: TestCase

test_empty()

test_ks()

test_one_k()

test_zero()

class seismicrna.core.tests.header_test.TestMakeHeader(methodName='runTest')

Bases: TestCase

test_all()

test_ks()

test_none()

test_rels()

class seismicrna.core.tests.header_test.TestParseHeader(methodName='runTest')

Bases: TestCase

test_clust()

test_empty()

test_extra_index_names()

test_extra_values()

test_invalid_numeric()

test_missing_index_names()

test_missing_values()

test_nonnumeric()

test_rel_index()

test_rel_index_invalid_name()

test_rel_index_repeated()

test_rel_index_valid_name()

test_rel_multiindex()

test_relclust()

class seismicrna.core.tests.header_test.TestRelClustHeader(methodName='runTest')

Bases: TestCase

test_clustered()

test_clusts()

test_index()

test_iter_clust_indexes()

test_ks()

test_level_keys()

test_level_names()

test_levels()

test_modified_all()

test_modified_ks()

test_modified_ks_empty()

test_modified_ks_none()

test_modified_none()

test_modified_nullified()

test_modified_rels()

test_modified_rels_empty()

test_modified_rels_none()

test_num_levels()

test_select_clust()

test_select_extra()

test_select_extra_emptystr()

test_select_extra_none()

test_select_extra_zero()

test_select_invalid_clust()

test_select_invalid_k()

test_select_invalid_rel()

test_select_k_clust_empty()

test_select_k_clust_exist()

test_select_ks()

test_select_none()

test_select_rel()

test_signature()

class seismicrna.core.tests.header_test.TestRelHeader(methodName='runTest')

Bases: TestCase

test_clustered()

test_clusts()

test_index()

test_iter_clust_indexes()

test_ks()

test_level_keys()

test_level_names()

test_levels()

test_modified_ks()

test_modified_none()

test_modified_rels()

test_modified_rels_empty()

test_modified_rels_none()

test_names()

test_num_levels()

test_rels_duplicated()

test_rels_empty()

test_rels_normal()

test_select_extra()

test_select_extra_zero()

test_select_invalid()

test_select_none()

test_select_one_rels()

test_select_rel()

test_select_two_rels()

test_signature()

test_size()

class seismicrna.core.tests.header_test.TestValidateKClust(methodName='runTest')

Bases: TestCase

test_float_clust()

test_float_k()

test_negative_zero()

test_one_zero_allowed()

test_positive_positive()

test_zero()

test_zero_negative()

test_zero_one_allowed()

class seismicrna.core.tests.header_test.TestValidateKs(methodName='runTest')

Bases: TestCase

test_duplicated()

test_empty()

test_valid()

test_zero()

class seismicrna.core.tests.logs_test.TestBeginEnd(methodName='runTest')

Bases: TestCase

test_begin_hidden_does_not_format()

test_begin_with_format_args()

test_ended_skipped_on_exception()

test_failed_hidden_does_not_format()

test_failed_with_format_args()

test_logs_began_and_ended()

class seismicrna.core.tests.logs_test.TestDepth(methodName='runTest')

Bases: TestCase

test_begin_pushes_and_restores()

test_context_restored_on_exception()

test_hidden_context_does_not_indent_console()

test_reconfigure_inside_begin_does_not_crash()

test_visible_context_indents_nested_message()

class seismicrna.core.tests.logs_test.TestEraseConfig(methodName='runTest')

Bases: TestCase

test_erase_config()

class seismicrna.core.tests.logs_test.TestFormatBody(methodName='runTest')

Bases: TestCase

test_depth_indents_message_only()

test_level_pid_message()

test_long_message_wrapped_to_terminal_width()

test_multiline_message_aligned()

class seismicrna.core.tests.logs_test.TestGetConfig(methodName='runTest')

Bases: TestCase

test_get_config()

class seismicrna.core.tests.logs_test.TestLazyFormatting(methodName='runTest')

Bases: TestCase

Template is formatted only when the level is visible.

test_exception_object()

test_formats_when_level_visible()

test_keyword_args()

test_plain_string_no_args()

test_skips_format_when_level_hidden()

class seismicrna.core.tests.logs_test.TestLevels(methodName='runTest')

Bases: TestCase

test_levels()

class seismicrna.core.tests.logs_test.TestLoggerClass(methodName='runTest')

Bases: TestCase

test_logger_class()

class seismicrna.core.tests.logs_test.TestLoggingExitOnError(methodName='runTest')

Bases: TestCase

test_exit_on_error()

test_no_exit_on_error()

class seismicrna.core.tests.logs_test.TestRestoreConfig(methodName='runTest')

Bases: TestCase

test_restore_config_error()

test_restore_config_no_error()

class seismicrna.core.tests.logs_test.TestSetConfig(methodName='runTest')

Bases: TestCase

test_defaults()

test_exit_on_error()

test_log_file_same_verbosity(): File records at the same verbosity as the console.

test_log_file_timestamp_prefix(): File lines carry a timestamp prefix; body matches console body.

test_no_log_color()

test_verbosity()

class seismicrna.core.tests.path_test.TestAddBranch(methodName='runTest')

Bases: TestCase

test_add_branches()

class seismicrna.core.tests.path_test.TestBranchesField(methodName='runTest')

Bases: TestCase

test_branches_build()

test_branches_parse()

test_branches_validate()

class seismicrna.core.tests.path_test.TestCmdSeg(methodName='runTest')

Bases: TestCase

test_cmdseg_build_branches_dict()

test_cmdseg_build_branches_list()

test_cmdseg_parse()

class seismicrna.core.tests.path_test.TestGetSeismicRNASourceDir(methodName='runTest')

Bases: TestCase

test_get_seismicrna_source_dir()

class seismicrna.core.tests.path_test.TestSymlinkIfNeeded(*args, **kwargs)

Bases: TestCase

setUp(): Hook method for setting up the test fixture before exercising it.

tearDown(): Hook method for deconstructing the test fixture after testing it.

test_link_not_symlink()

test_link_valid()

test_link_wrong_symlink()

test_target_not_exist()

class seismicrna.core.tests.path_test.TestValidateBranches(methodName='runTest')

Bases: TestCase

test_validate_branches()

test_validate_branches_flat()

class seismicrna.core.tests.progress_test.ProgressStateTestCase(methodName='runTest')

Bases: TestCase

Test case that leaves the progress bars as it found them.

Progress bars are global to the process, so a test that reconfigures them would otherwise close and disable the progress bar of the test command that is running it. Each test starts with no progress bars configured and ends with the previous configuration (and any bar that it was drawing) back in place.

enable_bars(): Draw progress bars on a fake terminal, and return that terminal.

setUp(): Hook method for setting up the test fixture before exercising it.

tearDown(): Hook method for deconstructing the test fixture after testing it.

class seismicrna.core.tests.progress_test.Terminal(initial_value='', newline='\n')

Bases: StringIO

Stream that claims to be a terminal, as stderr is in a console.

isatty()

Return whether this is an ‘interactive’ stream.

Return False if it can’t be determined.

class seismicrna.core.tests.progress_test.TestCloseBars(methodName='runTest')

Bases: ProgressStateTestCase

test_closes_bars_after_error()

test_closes_bars_left_open()

class seismicrna.core.tests.progress_test.TestConsoleStream(methodName='runTest')

Bases: ProgressStateTestCase

test_buffers_partial_lines()

test_passthrough_without_bars()

class seismicrna.core.tests.progress_test.TestFormatDesc(methodName='runTest')

Bases: TestCase

test_long_label_cut_short()

test_padded_to_a_fixed_width()

class seismicrna.core.tests.progress_test.TestLoggingWithBars(methodName='runTest')

Bases: ProgressStateTestCase

test_log_message_goes_above_the_bar()

class seismicrna.core.tests.progress_test.TestProgressBar(methodName='runTest')

Bases: ProgressStateTestCase

test_close_is_idempotent()

test_counts_are_clamped()

test_disabled_bar_does_nothing()

test_finished_bars_stay_and_the_stack_grows_downward()

test_finished_bars_survive_the_end_of_a_command()

test_full_block_sends_finished_bars_to_the_log()

test_nested_bars_close_out_of_order()

test_nested_tasks_get_their_own_lines()

test_no_items_numbered_zero()

test_numbers_count_from_one()

test_refresh_draws_every_bar()

test_set_label()

test_unnamed_task_gets_no_bar()

test_warning_written_above_the_bar()

class seismicrna.core.tests.progress_test.TestSetConfig(methodName='runTest')

Bases: ProgressStateTestCase

test_default_disabled()

test_disable_low_verbosity()

test_disable_off_terminal()

test_enable_on_terminal()

test_erase_config_leaves_the_bars_on_the_console()

test_erase_config_removes_hook()

test_restore_config()

class seismicrna.core.tests.progress_test.TestWriteConsole(methodName='runTest')

Bases: ProgressStateTestCase

test_child_process_does_not_draw()

test_failure_disables_bars()

test_write_from_other_process()

test_write_without_bars()

class seismicrna.core.tests.random_test.TestStochasticRound(methodName='runTest')

Bases: TestCase

test_float_arrays()

test_float_arrays_preserve_sum()

test_int_arrays()

class seismicrna.core.tests.stats_test.TestCalcBetaMV(methodName='runTest')

Bases: TestCase

test_scipy_beta()

class seismicrna.core.tests.stats_test.TestCalcBetaParams(methodName='runTest')

Bases: TestCase

test_invert()

class seismicrna.core.tests.stats_test.TestCalcDirichletMV(methodName='runTest')

Bases: TestCase

test_scipy_dirichlet()

class seismicrna.core.tests.stats_test.TestCalcDirichletParams(methodName='runTest')

Bases: TestCase

test_invert()

class seismicrna.core.tests.stats_test.TestKumaraswamyPDF(methodName='runTest')

Bases: TestCase

test_auc()

seismicrna.core.tests.stats_test.rand_dirichlet_alpha(n: int): Simulate n alpha parameters for a Dirichlet distribution.

class seismicrna.core.tests.task_test.TestCalcPoolSize(methodName='runTest')

Bases: TestCase

test_1_proc()

test_1_task()

test_multiple()

class seismicrna.core.tests.task_test.TestDispatchProgress(methodName='runTest')

Bases: ProgressStateTestCase

Test that progress bars do not change the results of dispatch.

test_bar_is_finished_afterwards()

test_same_results_with_and_without_bars()

class seismicrna.core.tests.task_test.TestIterFinished(methodName='runTest')

Bases: ProgressStateTestCase

Test the loop that yields finished tasks and redraws the bar.

test_ordered()

test_refreshes_while_waiting()

test_unnamed_task_still_draws_the_bars()

test_unordered()

class seismicrna.core.tests.task_test.TestTaskDepth(methodName='runTest')

Bases: ProgressStateTestCase

Test the logging context of a task in a child process.

This derives from ProgressStateTestCase because pretending to be a child process also configures this process to share its console, which would otherwise stop the test command from drawing its own progress bar.

test_child_starts_one_level_deeper()

class seismicrna.core.tests.unbias_test.TestAdjustMinGap(methodName='runTest')

Bases: TestCase

test_gap_le_zero_le_npos()

test_npos_le_zero_le_gap()

test_zero_le_gap_lt_npos()

test_zero_lt_npos_le_gap()

class seismicrna.core.tests.unbias_test.TestCalcPClust(methodName='runTest')

Bases: TestCase

test_p_clust()

class seismicrna.core.tests.unbias_test.TestCalcPClustGivenEndsNoClose(methodName='runTest')

Bases: TestCase

test_calc_p_clust_given_ends_noclose()

class seismicrna.core.tests.unbias_test.TestCalcPClustGivenNoClose(methodName='runTest')

Bases: TestCase

test_ncls1()

test_ncls2()

class seismicrna.core.tests.unbias_test.TestCalcPEnds(methodName='runTest')

Bases: TestCase

test_invert(): Test the inverse of calc_p_ends_given_clust_noclose.

class seismicrna.core.tests.unbias_test.TestCalcPEndsGivenClustNoClose(methodName='runTest')

Bases: TestCase

test_npos0_ncls1()

test_npos1_ncls0()

test_npos1_ncls1()

test_npos2_ncls1()

class seismicrna.core.tests.unbias_test.TestCalcPEndsGivenNoClose(methodName='runTest')

Bases: TestCase

test_calc_p_ends_given_noclose()

class seismicrna.core.tests.unbias_test.TestCalcPEndsObserved(methodName='runTest')

Bases: TestCase

test_calc_p_ends_given_observed()

class seismicrna.core.tests.unbias_test.TestCalcPMutGivenSpan(methodName='runTest')

Bases: TestCase

test_invert(): Test the inverse of calc_p_mut_given_span_noclose.

class seismicrna.core.tests.unbias_test.TestCalcPMutGivenSpanDropped(methodName='runTest')

Bases: TestCase

test_clusters()

test_simulated()

class seismicrna.core.tests.unbias_test.TestCalcPMutGivenSpanMerged(methodName='runTest')

Bases: TestCase

assert_not_statistically_significant(p_expect: ndarray, p_result: ndarray, coverage: ndarray, z_max: float = 6.0)

test_matches_simulated()

class seismicrna.core.tests.unbias_test.TestCalcPNoClose(methodName='runTest')

Bases: TestCase

test_p_noclose()

class seismicrna.core.tests.unbias_test.TestCalcPNoCloseGivenClust(methodName='runTest')

Bases: TestCase

test_p_noclose_given_clust()

class seismicrna.core.tests.unbias_test.TestCalcPNoCloseGivenEnds(methodName='runTest')

Bases: TestCase

Test calc_p_nomut_window and calc_p_noclose_given_ends.

test_clusters()

test_length_0()

test_length_1()

test_length_2_min_gap_1()

test_length_3_min_gap_1()

test_length_3_min_gap_2()

test_length_4_min_gap_1()

test_length_4_min_gap_2()

test_length_4_min_gap_3()

test_min_gap_0()

class seismicrna.core.tests.unbias_test.TestCalcPNoCloseGivenEndsAuto(methodName='runTest')

Bases: TestCase

test_1_dim()

test_2_dim()

test_invalid_dim()

class seismicrna.core.tests.unbias_test.TestCalcParams(methodName='runTest')

Bases: TestCase

test_infer()

class seismicrna.core.tests.unbias_test.TestCalcRectangularSum(methodName='runTest')

Bases: TestCase

static calc_spanning_sum_slow(array: ndarray)

test_2d()

test_3d()

class seismicrna.core.tests.unbias_test.TestCalcRectangularSumWeighted(methodName='runTest')

Bases: TestCase

static calc_weighted_slow(array: ndarray, weights: ndarray)

test_3d()

test_unit_weights()

class seismicrna.core.tests.unbias_test.TestClip(methodName='runTest')

Bases: TestCase

test_with_clip()

test_without_clip()

class seismicrna.core.tests.unbias_test.TestFindSplitPositions(methodName='runTest')

Bases: TestCase

test_0()

test_gap0()

test_gap1_single_end3()

test_gap1_single_end5()

test_gap1_split0_quadruple()

test_gap1_split1_double()

test_gap1_split1_single_mid()

test_gap1_split1_triple()

test_gap1_split2()

test_gap2_single_end3()

test_gap2_single_end5()

test_gap2_split0()

test_gap2_split1()

test_gap3_single_end3()

test_gap3_single_end5()

test_gap4_split0()

test_gap4_split1()

test_generic_split()

test_thresh0()

test_thresh1()

class seismicrna.core.tests.unbias_test.TestMergeMutationsRightToLeft(methodName='runTest')

Bases: TestCase

static bits_to_matrix(bits: str)

test_bits_to_matrix()

test_min_gap_0()

test_min_gaps_0_to_6()

test_one_column()

test_zero_columns()

class seismicrna.core.tests.unbias_test.TestNoCloseMuts(methodName='runTest')

Bases: TestCase

test_more_muts()

test_no_muts()

test_one_mut()

class seismicrna.core.tests.unbias_test.TestNormalize(methodName='runTest')

Bases: TestCase

test_sum_positive()

test_sum_zero()

class seismicrna.core.tests.unbias_test.TestQuickUnbias(methodName='runTest')

Bases: TestCase

Test that the quick unbiasing algorithm produces results very similar to the exact algorithm.

REL_TOL = 0.01

static random_params(npos: int, ncls: int, rng: Generator)

test_quick_unbias()

class seismicrna.core.tests.unbias_test.TestSlicePEnds(methodName='runTest')

Bases: TestCase

test_0x0()

test_slice_3x3()

test_slice_5x5()

class seismicrna.core.tests.unbias_test.TestTriuAllClose(methodName='runTest')

Bases: TestCase

test_equal()

test_float_equal()

test_float_unequal()

test_tril()

test_triu()

class seismicrna.core.tests.unbias_test.TestTriuCumSum(methodName='runTest')

Bases: TestCase

test_1x1x2()

test_2x2()

test_2x2x1()

test_2x2x2()

test_3x3()

test_all_0()

test_all_1()

test_explicit_sum()

class seismicrna.core.tests.unbias_test.TestTriuDiv(methodName='runTest')

Bases: TestCase

test_1x1()

test_1x1x1()

test_2x2()

test_2x2x2()

class seismicrna.core.tests.unbias_test.TestTriuDot(methodName='runTest')

Bases: TestCase

test_1x1()

test_1x1x1()

test_2x2()

test_2x2x2()

class seismicrna.core.tests.unbias_test.TestTriuMul(methodName='runTest')

Bases: TestCase

test_1x1()

test_1x1x1()

test_2x2()

test_2x2x2()

class seismicrna.core.tests.unbias_test.TestTriuNorm(methodName='runTest')

Bases: TestCase

compare(result: ndarray, expect: ndarray)

test_0x0()

test_0x0x1()

test_1x1()

test_1x1x1()

test_1x1x2()

test_2x2()

test_2x2_zero()

test_2x2x1()

test_2x2x2()

test_2x2x2_zero()

test_2x2x2x2()

test_2x2x2x2_zero()

class seismicrna.core.tests.unbias_test.TestTriuSum(methodName='runTest')

Bases: TestCase

test_1x1()

test_1x1x1()

test_1x1x2()

test_2x2()

test_2x2x1()

test_2x2x2()

test_2x2x2x2()

test_all_zero()

seismicrna.core.tests.unbias_test.label_no_close_muts(muts: ndarray, min_gap: int): Return a 1D vector that is True for every row in muts that has no two mutations that are too close, otherwise False.

seismicrna.core.tests.unbias_test.merge_mutations_right_to_left(muts: ndarray, min_gap: int)

Merge close mutations row by row from right to left.

For each row, scan from the last column to the first. When a True value is encountered, set the next min_gap positions to the left to False, then continue scanning.

seismicrna.core.tests.unbias_test.no_close_muts(read: ndarray, min_gap: int): Return True if the read has no two mutations separated by fewer than min_gap non-mutated positions, otherwise False.

seismicrna.core.tests.unbias_test.simulate_params(n_pos: int, n_cls: int, p_mut_max: float = 1.0): Return p_mut, p_ends, and p_clust parameters.

seismicrna.core.tests.unbias_test.simulate_reads(n_reads: int, p_mut: ndarray, p_ends: ndarray, seed: int = 0): Simulate n_reads reads based on the mutation rates (p_mut) and the distributions of end coordinates (p_ends).

seismicrna.core.tests.unbias_test.triu_allclose(a: ndarray | float, b: ndarray | float, rtol: float = 0.001, atol: float = 1e-06)

Whether the upper triangles of a and b are all close.

Parameters:

a (np.ndarray | float) – Array 1.
b (np.ndarray | float) – Array 2.
rtol (float = 1.0e-3) – Relative tolerance.
atol (float = 1.0e-6) – Absolute tolerance.

Returns:

Whether all elements of the upper triangles of a and b are close using the function np.allclose.

Return type:

bool

seismicrna.core.tests.unbias_test.triu_sum(a: ndarray)

Calculate the sum over the upper triangle(s) of array a.

Parameters:: a (np.ndarray) – Array whose upper triangle to sum.
Returns:: Sum of the upper triangle(s), with the same shape as the third and subsequent dimensions of a.
Return type:: np.ndarray

class seismicrna.core.tests.validate_test.TestRequireAtLeast(methodName='runTest')

Bases: TestCase

test_atleast()

test_atleast_wrong_type_minimum_unnamed()

test_not_atmost()

class seismicrna.core.tests.validate_test.TestRequireAtMost(methodName='runTest')

Bases: TestCase

test_atmost()

test_atmost_wrong_type_maximum_unnamed()

test_not_atmost()

class seismicrna.core.tests.validate_test.TestRequireEqual(methodName='runTest')

Bases: TestCase

test_custom_not_valueerror()

test_custom_valueerror()

test_equal_int()

test_equal_str()

test_equal_wrong_type_other_named()

test_equal_wrong_type_other_unnamed()

test_equal_wrong_type_value()

test_not_equal_int_named()

test_not_equal_int_unnamed()

test_not_equal_str_named()

test_not_equal_str_unnamed()

class seismicrna.core.tests.validate_test.TestRequireIsIn(methodName='runTest')

Bases: TestCase

test_custom_exception()

test_custom_not_exception()

test_isin()

test_not_isin_named()

test_not_isin_unnamed()

class seismicrna.core.tests.validate_test.TestRequireIsInstance(methodName='runTest')

Bases: TestCase

test_custom_not_valueerror()

test_custom_typeerror()

test_is_instance()

test_is_instances()

test_not_isinstance()

test_not_isinstances()

class seismicrna.core.tests.validate_test.TestRequireIsSubclass(methodName='runTest')

Bases: TestCase

test_custom_not_valueerror()

test_custom_valueerror()

test_is_subclass()

test_is_subclasses()

test_not_issubclass()

test_not_issubclasses()

class seismicrna.core.tests.version_test.TestConsistentVersion(methodName='runTest')

Bases: TestCase

test_meson_build()

class seismicrna.core.tests.version_test.TestFormatVersion(methodName='runTest')

Bases: TestCase

test_format_default()

test_format_notag()

test_format_prtag()

class seismicrna.core.tests.version_test.TestParseVersion(methodName='runTest')

Bases: TestCase

test_invalid_1()

test_invalid_2()

test_invalid_3()

test_invalid_4()

test_invalid_5()

test_parse_default()

test_parse_notag()

test_parse_prtag_letter()

test_parse_prtag_letters()

test_parse_prtag_letters_numbers()