seismicrna.relate.py.tests package

Submodules

class seismicrna.relate.py.tests.cigar_test.TestParseCigar(methodName='runTest')

Bases: TestCase

Test function parse_cigar.

test_cigar_align_valid()

Parse a valid CIGAR string with align codes.

test_cigar_match_subst_valid()

Parse a valid CIGAR string with match and subst codes.

class seismicrna.relate.py.tests.encode_test.TestEncodeRelate(methodName='runTest')

Bases: TestCase

test_encode_relate_hi_qual()

Test when the quality is at least the minimum.

test_encode_relate_lo_qual()

Test when the quality is less than the minimum.

class seismicrna.relate.py.tests.encode_test.TestIsACGT(methodName='runTest')

Bases: TestCase

test_is_acgt()

class seismicrna.relate.py.tests.encode_test.TestSubsCoding(methodName='runTest')

Bases: TestCase

test_subs_decodings()

test_subs_encodings()