seismicrna.importmm.tests package
Submodules
- class seismicrna.importmm.tests.mm_test.TestIterMMFile(methodName='runTest')
Bases:
TestCase- setUp()
Hook method for setting up the test fixture before exercising it.
- tearDown()
Hook method for deconstructing the test fixture after testing it.
- test_ref1_id()
- test_ref1_read0_single_mutation()
- test_ref1_read0_start_end()
- test_ref1_read1_two_mutations()
- test_ref1_read2_no_mutations()
- test_ref1_read_count()
- test_ref1_sequence()
- test_ref2_id()
- test_ref2_read0_mutation()
- test_ref2_read1_no_mutations()
- test_ref2_read_count()
- test_ref2_sequence()
- test_yields_two_transcripts()
- class seismicrna.importmm.tests.write_test.TestBuildMutCodes(methodName='runTest')
Bases:
TestCaseVerify that per-position mutation codes are computed correctly.
- test_acgt_all_positions()
- test_insert3_false_uses_ins5()
- test_insert3_true_base_a()
- test_insert3_true_base_c()
- test_insert3_true_base_g()
- test_insert3_true_base_n()
- test_insert3_true_base_t()
- class seismicrna.importmm.tests.write_test.TestImportMM(methodName='runTest')
Bases:
TestCaseIntegration tests: import a two-reference MM file and verify outputs.
- setUp()
Hook method for setting up the test fixture before exercising it.
- tearDown()
Hook method for deconstructing the test fixture after testing it.
- test_min_reads_skips_ref2()
When min_reads exceeds ref2’s read count, only ref1 is imported.
- test_ref1_batch_exists()
- test_ref1_refseq_exists()
- test_ref1_report_exists()
- test_ref1_report_n_reads_rel()
- test_ref1_report_n_reads_xam()
- test_ref1_report_ref()
- test_ref1_report_sample()
- test_ref2_batch_exists()
- test_ref2_refseq_exists()
- test_ref2_report_exists()
- test_ref2_report_n_reads_rel()
- test_ref2_report_n_reads_xam()
- test_ref2_report_ref()
- test_ref2_report_sample()
- test_result_paths_are_distinct()
- test_returns_two_paths()