seismicrna.core.rna.tests package
Submodules
- class seismicrna.core.rna.tests.db_test.TestFormatDbString(methodName='runTest')
Bases:
TestCase- test_deep_pairs()
- test_excess_pseudoknot()
- test_invalid_pair()
- test_invalid_pos3()
- test_invalid_pos5()
- test_multi_pseudoknot()
- test_no_pairs()
- test_one_pair()
- test_pseudoknot()
- test_repeat_pos3()
- test_repeat_pos5()
- test_shallow_pairs()
- class seismicrna.core.rna.tests.db_test.TestPairedMarks(methodName='runTest')
Bases:
TestCase- test_paired_marks()
- class seismicrna.core.rna.tests.db_test.TestParseDbString(methodName='runTest')
Bases:
TestCase- test_dangling_closer()
- test_dangling_opener()
- test_deep_pairs()
- test_multi_marks()
- test_multi_pseudoknot()
- test_no_pairs()
- test_pseudoknot()
- test_shallow_pairs()
- class seismicrna.core.rna.tests.pair_test.TestConstants(methodName='runTest')
Bases:
TestCase- test_unpaired()
Partner given to unpaired bases in CT format.
- class seismicrna.core.rna.tests.pair_test.TestDictToPairs(methodName='runTest')
Bases:
TestCase- test_empty()
- test_invalid_pair()
- test_invalid_position()
- test_missing_reverse_1()
- test_missing_reverse_2()
- test_normal()
- class seismicrna.core.rna.tests.pair_test.TestDictToTable(methodName='runTest')
Bases:
TestCase- test_empty()
- test_normal()
- class seismicrna.core.rna.tests.pair_test.TestFindEnclosingPairs(methodName='runTest')
Bases:
TestCase- test_nested()
- test_no_pairs()
- test_pseudoknotted()
- class seismicrna.core.rna.tests.pair_test.TestPairsToDict(methodName='runTest')
Bases:
TestCase- test_conflicting_pair_1()
- test_conflicting_pair_2()
- test_empty()
- test_invalid_position()
- test_normal()
- class seismicrna.core.rna.tests.pair_test.TestPairsToTable(methodName='runTest')
Bases:
TestCase- test_conflicting_pair_1()
- test_conflicting_pair_2()
- test_invalid_position_1()
- test_invalid_position_2()
- test_no_pairs()
- test_normal()
- class seismicrna.core.rna.tests.pair_test.TestTableToDict(methodName='runTest')
Bases:
TestCase- test_empty()
- test_normal()
- class seismicrna.core.rna.tests.pair_test.TestTableToPairs(methodName='runTest')
Bases:
TestCase- test_empty()
- test_normal()
- class seismicrna.core.rna.tests.roc_test.TestComputeAucRoc(methodName='runTest')
Bases:
TestCase- test_all_false_positives()
- test_all_positions_unpaired()
- test_empty_prediction()
- test_empty_prediction_with_unpaired()
- test_invalid_dtype()
- test_invalid_dtype_for_unpaired()
- test_mixed_prediction()
- test_neither_paired_nor_unpaired()
- test_no_positions_unpaired()
- test_perfect_prediction()
- class seismicrna.core.rna.tests.roc_test.TestComputeFprTpr(methodName='runTest')
Bases:
TestCase- test_all_false_positives()
- test_all_positions_unpaired()
- test_empty_prediction()
- test_empty_prediction_with_unpaired()
- test_invalid_dtype()
- test_invalid_dtype_for_unpaired()
- test_mixed_paired_unpaired()
- test_mixed_prediction()
- test_neither_paired_nor_unpaired()
- test_no_positions_unpaired()
- test_perfect_prediction()
- class seismicrna.core.rna.tests.roc_test.TestComputeRocCurve(methodName='runTest')
Bases:
TestCase- test_all_false_positives()
- test_all_positions_unpaired()
- test_empty_prediction()
- test_empty_prediction_with_unpaired()
- test_invalid_dtype()
- test_invalid_dtype_for_unpaired()
- test_mixed_prediction()
- test_neither_paired_nor_unpaired()
- test_no_positions_unpaired()
- test_perfect_prediction()
- class seismicrna.core.rna.tests.struct_test.TestCalcWfmi(methodName='runTest')
Bases:
TestCase- test_all_unpaired()
- test_all_vs_internal_pairs_1()
- test_all_vs_internal_pairs_2()
- test_completely_different_structures()
- test_different_regions()
- test_empty_region()
- test_identical_structures()
- test_internal_pairs_only()
- test_mixed_paired_unpaired()
- test_mixed_paired_unpaired_subset()
- test_one_empty_one_paired()
- test_pseudoknot_structures()