seismicrna.core.rna.tests package
Submodules
- class seismicrna.core.rna.tests.db_test.TestFormatDbStructure(methodName='runTest')
Bases:
TestCase- test_deep_pairs()
- test_excess_pseudoknot()
- test_invalid_pair()
- test_invalid_pos3()
- test_invalid_pos5()
- test_multi_pseudoknot()
- test_no_pairs()
- test_one_pair()
- test_pseudoknot()
- test_repeat_pos3()
- test_repeat_pos5()
- test_shallow_pairs()
- class seismicrna.core.rna.tests.db_test.TestPairedMarks(methodName='runTest')
Bases:
TestCase- test_paired_marks()
- class seismicrna.core.rna.tests.db_test.TestParseDbStructure(methodName='runTest')
Bases:
TestCase- test_dangling_closer()
- test_dangling_opener()
- test_deep_pairs()
- test_multi_marks()
- test_multi_pseudoknot()
- test_no_pairs()
- test_pseudoknot()
- test_shallow_pairs()
- class seismicrna.core.rna.tests.pair_test.TestConstants(methodName='runTest')
Bases:
TestCase- test_unpaired()
Partner given to unpaired bases in CT format.
- class seismicrna.core.rna.tests.pair_test.TestDictToPairs(methodName='runTest')
Bases:
TestCase- test_empty()
- test_invalid_pair()
- test_invalid_position()
- test_missing_reverse_1()
- test_missing_reverse_2()
- test_normal()
- class seismicrna.core.rna.tests.pair_test.TestDictToTable(methodName='runTest')
Bases:
TestCase- test_empty()
- test_normal()
- class seismicrna.core.rna.tests.pair_test.TestFindEnclosingPairs(methodName='runTest')
Bases:
TestCase- test_nested()
- test_no_pairs()
- test_pseudoknotted()
- class seismicrna.core.rna.tests.pair_test.TestPairsToDict(methodName='runTest')
Bases:
TestCase- test_conflicting_pair_1()
- test_conflicting_pair_2()
- test_empty()
- test_invalid_position()
- test_normal()
- class seismicrna.core.rna.tests.pair_test.TestPairsToTable(methodName='runTest')
Bases:
TestCase- test_conflicting_pair_1()
- test_conflicting_pair_2()
- test_invalid_position_1()
- test_invalid_position_2()
- test_no_pairs()
- test_normal()