Brickle: Compressed Python Objects ------------------------------------------------------------------------ Brickle file: Content format ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Brickle is not technically a data format. It is rather a file containing a `pickled Python object`_ that has been compressed with `brotli`_. The name "brickle" can be a - portmanteau of "brotli" and "pickle" - suggestion that the file is supposed to contain a Python object that has been compressed into a dense brick of data - deliberate misspelling of a `neighborhood in Miami, FL`_ As a brickle file can contain any Python object, the structure of the object's data itself is of more interest than the file format. See :doc:`../../data/index` for information on the data structures. Brickle file: Path format ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Brickle file extensions """""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""" SEISMIC-RNA accepts the following extensions for brickle files: - ``.brickle`` Brickle path parsing """""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""" Brickle files use a variety of path structures throughout SEISMIC-RNA. They are most commonly used to store batches of data, in which case the file name follows the format ``{btype}-batch-{bnum}.brickle``, where ``{btype}`` is the type of the batch and ``{bnum}`` is the number of the batch (the first batch in each set is numbered 0). Brickle file: Uses ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Brickle as input file """""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""" Brickle files are not explicitly passed as input files via the command line, but when a report file that is associated with brickle files is passed as an input file, the brickle files will be read. This process happens during the following commands: - ``all`` - ``mask`` - ``cluster`` - ``table`` Brickle as output file """""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""" - The ``relate``, ``mask``, and ``cluster`` commands all output brickle files containing data along with their report files. Brickle as temporary file """""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""""" Brickle files are not used as temporary files by any command. .. _`pickled Python object`: https://docs.python.org/3/library/pickle.html .. _brotli: https://brotli.org/ .. _neighborhood in Miami, FL: https://en.wikipedia.org/wiki/Brickell