Gallery
=========



.. _base_coverage:

Base coverage
-------------

Plot the base coverage of a single row of your dataframe.
                
.. raw:: html
    :file: ../plots/base_coverage.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: base_coverage

    .. autofunction:: seismic_graph.study.Study.base_coverage
    

    
.. _compare_mutation_profiles:

Compare mutation profiles
-------------------------

Plot the mutation fraction of multiple mutation profiles.
                
.. raw:: html
    :file: ../plots/compare_mutation_profiles.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: compare_mutation_profiles

    .. autofunction:: seismic_graph.study.Study.compare_mutation_profiles
    

    
.. _correlation_by_refs_between_samples:

Correlation by refs between samples
-----------------------------------

Plot the correlation between mutation profiles of multiple samples, for each reference.
                
.. raw:: html
    :file: ../plots/correlation_by_refs_between_samples.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: correlation_by_refs_between_samples

    .. autofunction:: seismic_graph.study.Study.correlation_by_refs_between_samples
    

    
.. _experimental_variable_across_samples:

Experimental variable across samples
------------------------------------

Plot a given experimental variable vs Mutation fraction across samples for a given reference and section.
                
.. raw:: html
    :file: ../plots/experimental_variable_across_samples.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: experimental_variable_across_samples

    .. autofunction:: seismic_graph.study.Study.experimental_variable_across_samples
    

    
.. _mutation_fraction:

Mutation fraction
-----------------

Plot the mutation rates as histograms.
                
.. raw:: html
    :file: ../plots/mutation_fraction.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: mutation_fraction

    .. autofunction:: seismic_graph.study.Study.mutation_fraction
    

    
.. _mutation_fraction_delta:

Mutation fraction delta
-----------------------

Plot the Mutation fraction difference between two mutation profiles.
                
.. raw:: html
    :file: ../plots/mutation_fraction_delta.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: mutation_fraction_delta

    .. autofunction:: seismic_graph.study.Study.mutation_fraction_delta
    

    
.. _mutation_fraction_identity:

Mutation fraction identity
--------------------------

Plot the mutation rates as histograms.
                
.. raw:: html
    :file: ../plots/mutation_fraction_identity.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: mutation_fraction_identity

    .. autofunction:: seismic_graph.study.Study.mutation_fraction_identity
    

    
.. _mutation_per_read_per_reference:

Mutation per read per reference
-------------------------------

Plot the number of mutations per read per reference as an histogram.
                
.. raw:: html
    :file: ../plots/mutation_per_read_per_reference.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: mutation_per_read_per_reference

    .. autofunction:: seismic_graph.study.Study.mutation_per_read_per_reference
    

    
.. _mutations_per_read_per_sample:

Mutations per read per sample
-----------------------------

Plot the number of mutations per read per sample as an histogram.
                
.. raw:: html
    :file: ../plots/mutations_per_read_per_sample.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: mutations_per_read_per_sample

    .. autofunction:: seismic_graph.study.Study.mutations_per_read_per_sample
    

    
.. _num_aligned_reads_per_reference_frequency_distribution:

Num aligned reads per reference frequency distribution
------------------------------------------------------

Plot the number of aligned reads per reference as a frequency distribution. x axis is the number of aligned reads per reference, y axis is the count of reference that have this number of aligned reads.
                
.. raw:: html
    :file: ../plots/num_aligned_reads_per_reference_frequency_distribution.html
    
.. dropdown:: :fa:`eye,mr-1` **DOCSTRING**: num_aligned_reads_per_reference_frequency_distribution

    .. autofunction:: seismic_graph.study.Study.num_aligned_reads_per_reference_frequency_distribution