Welcome to DREEM’s documentation!
DREEM stands for Detection of RNA folding Ensembles using Expectation-Maximization. This method was published by the Rouskin lab in Nature (2020).
Overview
[Short explanation of how the software works, a couple important algorithms, etc.]
Table of Contents
DREEM
Plots
- Get started
- Gallery
- Base coverage
- Compare mutation profiles
- DeltaG vs sub rate
- Experimental variable across samples
- Mutation fraction
- Mutation fraction delta
- Mutation fraction identity
- Mutation per read per reference
- Mutations in barcodes
- Mutations per read per sample
- Num aligned reads per reference frequency distribution
- Write your own plots
About